MOMD:
Mouse Oral Microbiome Database
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MOMD Genome Explorer
Selected genome:
Shigella flexneri
19428wH2_1568
Change genome:
Available genomes
1. Actinomyces bowdenii WMus004.1
2. Bacteroides acidifaciens 19428wH3_P2318
3. Bacteroides acidifaciens 8_33DSS_C5_S8
4. Citrobacter koseri 19428wH4_BL23
5. Dysgonomonas mossii 19428wE4_P11
6. Enterococcus gallinarum 19428wB3_C2
7. Enterococcus gallinarum ENT.1
8. Escherichia coli 19428wD4_HM13
9. Gemella palaticanis CIP106318T.1
10. Gemella sp. 19428wG2_WT2a
11. Gemella sp. GH3.1
12. Gemella sp. GL1.1
13. Granulicatella sp. 19428wC4_WM01
14. Jeotgalicoccus nanhaiensis 19428wE5_W307
15. Lactobacillus johnsonii 19428wE2_CC3
16. Lactobacillus murinus LAC.1
17. Ligilactobacillus murinus 19428wF2_HT12
18. Ligilactobacillus murinus 2_2BalbC1BO2_S2
19. Mammaliicoccus lentus 19428wC1_HT5
20. Mammaliicoccus lentus 19428wG1_AE2
21. Mammaliicoccus lentus 3_3BalbC2O2_S3
22. Mammaliicoccus sciuri 19428wE1_BL01
23. Mammaliicoccus sciuri ACT.1
24. Microbacterium paludicola 19428wA4_P1012
25. Micrococcus aloeverae 19428wE3_DK2
26. Micrococcus yunnanensis 19428wG4_IOV6
27. Muribacter muris 19428wC3_WT12
28. Muribacter muris 7_18CXCR221ANO_S7
29. Neisseria sp. 19428wB4_WF04
30. Parabacteroides goldsteinii 19428wG3_P14
31. Pasteurella sp. 19428wF3_WM03
32. Proteus mirabilis 19428wB5_irhom_Sw
33. Providencia alcalifaciens WMus003.1
34. Rothia nasimurium 19428wA5_irhom_31
35. Sanguibacter inulinus DSM100099.1
36. Shigella flexneri 19428wH2_1568
37. Staphylococcus arlettae 19428wH1_IOV5
38. Staphylococcus aureus 19428wD1_P36
39. Staphylococcus aureus 4_5BalbC4O2_S4
40. Staphylococcus aureus STF.1
41. Staphylococcus capitis GW2.1
42. Staphylococcus saprophyticus 19428wB1_WM06
43. Staphylococcus warneri 19428wF1_P912
44. Staphylococcus xylosus 19428wA1_WT6
45. Streptococcus acidominimus 19428wB2_HT4
46. Streptococcus acidominimus 6_8CXCR23O2_S6
47. Streptococcus cuniculi 19428wD2_WM131
48. Streptococcus danieliae 1_1BalbC1O2_S1
49. Streptococcus danieliae STR.1
50. Streptococcus sp. 19428wA2_WM07
51. Streptococcus sp. 19428wC2_LYSM12
52. Streptococcus sp. 19428wD3_AN2
from a total of 52 genomes
Available tools:
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PROKKA Annotation
NCBI Annotation
BLAST Against Genome
Genome Info
Taxon Description
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PROKKA Genome Annotation:
contigs: 237
bases: 5,139,722 bps
CDS: 4,826
rRNA: 10
Repeat region:
tmRNA: 1
tRNA: 89
misc RNA:
Total features: 4,926
Total number of protein coding genes annotated/found:
4,826
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Items 21 - 40
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Molecule
PID/GenBank ID *^
Sequences
Size (NA/AA) ^
Range ^
Gene Product Name
SEQF5015|JADGKR010000006.1
SEQF5015_04183
Genome Viewer
NA
AA
2109/703
23703-25811
Ribosomal RNA large subunit methyltransferase K/L
SEQF5015|JADGKR010000006.1
SEQF5015_04184
Genome Viewer
NA
AA
1908/636
25823-27730
ABC transporter ATP-binding protein uup
SEQF5015|JADGKR010000006.1
SEQF5015_04185
Genome Viewer
NA
AA
1254/418
27860-29113
Intermembrane transport protein PqiA
SEQF5015|JADGKR010000006.1
SEQF5015_04186
Genome Viewer
NA
AA
1641/547
29118-30758
Intermembrane transport protein PqiB
SEQF5015|JADGKR010000006.1
SEQF5015_04187
Genome Viewer
NA
AA
564/188
30755-31318
Intermembrane transport lipoprotein PqiC
SEQF5015|JADGKR010000006.1
SEQF5015_04188
Genome Viewer
NA
AA
168/56
31574-31741
Ribosome modulation factor
SEQF5015|JADGKR010000006.1
SEQF5015_04189
Genome Viewer
NA
AA
627/209
32437-31811
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase
SEQF5015|JADGKR010000006.1
SEQF5015_04190
Genome Viewer
NA
AA
1761/587
34158-32398
Lon protease
SEQF5015|JADGKR010000006.1
SEQF5015_04191
Genome Viewer
NA
AA
453/151
34344-34796
Macrodomain Ter protein
SEQF5015|JADGKR010000006.1
SEQF5015_04192
Genome Viewer
NA
AA
1053/351
35924-34872
Outer membrane protein A
SEQF5015|JADGKR010000006.1
SEQF5015_04193
Genome Viewer
NA
AA
510/170
36790-36281
Cell division inhibitor SulA
SEQF5015|JADGKR010000006.1
SEQF5015_04194
Genome Viewer
NA
AA
630/210
37009-37638
Protein Sxy
SEQF5015|JADGKR010000006.1
SEQF5015_04195
Genome Viewer
NA
AA
2163/721
39763-37601
Inner membrane protein YccS
SEQF5015|JADGKR010000006.1
SEQF5015_04196
Genome Viewer
NA
AA
447/149
40219-39773
Inner membrane protein YccF
SEQF5015|JADGKR010000006.1
SEQF5015_04197
Genome Viewer
NA
AA
2055/685
40342-42396
DNA helicase IV
SEQF5015|JADGKR010000006.1
SEQF5015_04198
Genome Viewer
NA
AA
459/153
42886-42428
Methylglyoxal synthase
SEQF5015|JADGKR010000006.1
SEQF5015_04199
Genome Viewer
NA
AA
663/221
43644-42982
hypothetical protein
SEQF5015|JADGKR010000006.1
SEQF5015_04200
Genome Viewer
NA
AA
414/138
43817-44230
putative protein YccU
SEQF5015|JADGKR010000006.1
SEQF5015_04201
Genome Viewer
NA
AA
318/106
44592-44275
Heat shock protein HspQ
SEQF5015|JADGKR010000006.1
SEQF5015_04202
Genome Viewer
NA
AA
1176/392
45825-44650
Ribosomal RNA large subunit methyltransferase I
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Items 21 - 40
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* Click GI, UID, Gene Product to go to NCBI record
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Copyright 2020 Forsyth Institute
Page last updated: July 7, 2021 08:39:35
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